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How to Select Bookkeeping Software for Multiple Businesses

Author: Tabs Team

Last updated: March 12, 2025

How to Select Bookkeeping Software for Multiple Businesses
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Running multiple businesses? Keeping your financials straight can be a headache. Spreadsheets multiplying like rabbits? Logins you can't remember?

It's time to bring order to the chaos with bookkeeping software for multiple businesses. This isn't just about neatness; it's about gaining a clear, consolidated view of your financial health across all your entities, so you can make smarter decisions and free up time to focus on what matters most: growth. In this post, we'll break down the must-have features, explore top software options, and give you a clear roadmap to finding the perfect fit for your multi-entity business.

Key Takeaways

  • Centralized software simplifies complex finances: Streamline your multi-entity bookkeeping with a single platform. Look for features like multi-currency support, automated reporting, and integration with your billing platform.
  • Finding the right software takes research: Assess your needs, considering factors like scalability, integrations, and user access. Balance must-have features with your budget, and watch out for hidden costs.
  • Implementation and training are essential: Ensure smooth data migration, train your team thoroughly, and automate key tasks. Prioritize robust security to protect your financial data.

Why Have Bookkeeping Software for Multiple Businesses?

Bookkeeping software for multiple businesses, also known as multi-entity accounting software, helps you manage the finances of several distinct companies, branches, or subsidiaries all within a single platform. Think of it as a central hub for all your financial data, eliminating the need for separate accounting software and spreadsheets for each entity. This type of software is particularly useful for businesses with complex structures, such as franchises, holding companies, or organizations with international operations. It streamlines financial processes, improves accuracy, and provides a consolidated view of your overall financial health.

Challenges of Managing Multiple Entities

Juggling the books for multiple businesses presents unique challenges. Keeping each entity's finances separate, consolidating reports, and maintaining accurate records across the board can quickly become overwhelming. Without a centralized system, you risk errors, inconsistencies, and a significant drain on time and resources.

Choosing the right software involves considering factors like scalability and integration with your existing systems. You'll also want to ensure the software supports multiple currencies and languages if you operate internationally, and that it can generate consolidated financial reports for a comprehensive overview. Finding a solution that addresses these complexities is crucial for efficient financial management.

Benefits of Specialized Software

Specialized multi-entity accounting software offers significant advantages over managing separate books for each business. These platforms often include features found in Enterprise Resource Planning (ERP) systems and integrate with other accounting tools, creating a seamless financial ecosystem. This software allows you to manage finances across different business units, share charts of accounts and calendars, and even handle multiple currencies. By consolidating financial data into one system, you gain a clearer picture of your overall financial performance, simplify reporting, and free up valuable time to focus on strategic growth.

Features like automated reporting and consolidated financial statements offer valuable insights into the health of each entity and the organization as a whole. Combining expense reporting software with multi-company accounting software further streamlines your financial management system, improving efficiency and accuracy.

Essential Features

Looking for bookkeeping software for multiple businesses? Here’s what to look for:

Manage Multiple Companies

This might seem obvious, but your software must handle multiple business accounts in one place. It should be designed to manage the financial records and activities for multiple businesses on a single platform, eliminating the need to juggle separate logins and spreadsheets. This centralized approach streamlines your financial overview and saves you valuable time.

Consolidate Financial Reports

A key feature of multi-entity bookkeeping software is the ability to consolidate financial data. The software should combine data from all your businesses into a single report, like a balance sheet or income statement. This gives you a complete and accurate picture of your overall financial health, making it easier to spot trends, identify areas for improvement, and make informed decisions.

Customize Charts of Accounts

Every business is unique. Your software should offer the flexibility to customize charts of accounts to fit each business's specific needs. This ensures accurate tracking and reporting of financial data relevant to each entity. You should be able to easily tailor your chart of accounts to reflect the nuances of each business.

Support Multiple Currencies

If you have international operations, your bookkeeping software must handle different currencies and exchange rates accurately. This feature simplifies international transactions, consolidates financial reporting across borders, and minimizes the risk of errors due to manual currency conversions. Look for software that automatically updates exchange rates to ensure accurate reporting.

Control User Access

When multiple team members access financial data, robust user access controls are essential. Your software should allow you to grant different levels of access to different users. This ensures data security and prevents unauthorized changes to sensitive financial information. You can restrict access to specific entities or functionalities based on individual roles and responsibilities.

Integrate with Other Systems

Choose software that integrates with your other essential business tools, like payroll systems or CRM software. Seamless integration streamlines workflows, reduces manual data entry, and ensures data consistency across all platforms. This is especially important for SaaS businesses with complex billing needs.

Automate Features

Look for software that automates time-consuming tasks like sending invoices, tracking expenses, and generating reports. This frees up your time to focus on higher-level tasks, like analyzing financial data and making strategic decisions. Features like automated recurring billing and expense tracking can significantly improve your team's productivity.

Exploring Some Software Options

Finding the right bookkeeping software can feel overwhelming with so many options available. To simplify your search, I've compiled a list of popular choices known for their ability to manage multiple entities effectively. Remember, the best choice for your business depends on your specific needs and budget.

QuickBooks Online

  • Pros: QuickBooks Online is a popular choice for small businesses due to its automation features, which can reduce errors and save time. It's also known for its scalability, a plus for growing SaaS companies.
  • Cons: The extensive features that make QuickBooks powerful can also make the interface a bit overwhelming for new users. Be prepared for a learning curve.

Xero

  • Pros: Xero is a solid option for small to medium-sized SaaS businesses that need a solution that can handle unlimited users. It offers basic multi-currency features and integrates with various third-party apps, extending its functionality.
  • Cons: While Xero offers a good range of features, its reporting capabilities may not be as comprehensive as some competitors, which could be a drawback for data-driven SaaS companies.

FreshBooks

  • Pros: FreshBooks shines when it comes to managing multiple businesses from one location. Features like automated invoicing and expense tracking can save you serious time—FreshBooks claims users save an average of 16 hours per month.
  • Cons: While great for streamlining day-to-day tasks, FreshBooks may lack some of the advanced accounting features larger or more complex SaaS businesses require.

Sage Intacct

  • Pros: If your SaaS business is scaling rapidly, Sage Intacct offers the advanced features and multi-dimensional financial views you need. It also integrates well with other business tools.
  • Cons: Sage Intacct's robust features come at a price. It's an investment that may not be feasible for smaller SaaS startups or those on a tight budget.

NetSuite

  • Pros: NetSuite is a powerful all-in-one solution that combines ERP, CRM, and accounting, making it ideal for SaaS businesses managing multiple entities. It offers strong automation for intercompany transactions and advanced reporting capabilities to support data-driven decision-making.
  • Cons: NetSuite’s comprehensive feature set comes at a high cost, making it less accessible for smaller SaaS startups. Additionally, its complexity means a steep learning curve, requiring time and resources for proper implementation.

Wave Accounting

  • Pros: If you're a very small SaaS startup or running a simple side hustle, Wave's simplicity and free access might be appealing. It's a straightforward way to consolidate your bookkeeping and invoices.
  • Cons: Wave is best for micro-businesses. If you process a high volume of transactions daily, you'll likely outgrow Wave quickly. It lacks the robust features of paid software.

Consider Tabs' Bookkeeping Software for Multiple Businesses

If you're managing multiple entities, Tabs offers a streamlined solution to simplify your bookkeeping. With automated invoicing, consolidated financial reporting, and seamless integrations, Tabs helps eliminate the headaches of juggling multiple systems.

Its AI-powered tools reduce manual data entry, ensuring accuracy across all your businesses while saving you time. Whether you're running a growing SaaS company or overseeing multiple subsidiaries, Tabs provides the control and flexibility you need to scale efficiently.

Pricing and Costs

Finding the right bookkeeping software involves balancing features with affordability. This section breaks down common pricing models and hidden costs to watch out for when choosing bookkeeping software for multiple businesses.

Subscription vs. One-Time Purchase

Most bookkeeping software solutions have moved away from one-time purchases in favor of subscriptions. This shift can present budget challenges, especially if you're accustomed to perpetual licenses. While some users prefer one-time purchases, ongoing support and updates are crucial for accounting software. Subscription models often bundle these essential services, ensuring your software remains compliant and secure.

Consider the long-term costs of a subscription versus a one-time purchase, especially if you anticipate needing the software for years to come.

Tiered Pricing Structures

Many software providers use tiered pricing, offering different feature sets at various price points. A basic plan might start as low as $15 per month per business, covering only core features. As your business needs grow, you might require a higher tier to unlock advanced functionalities like consolidated reporting or multi-currency support.

Carefully analyze each tier to ensure it aligns with your current and future requirements. Don't overpay for features you don't need, but also avoid a limited plan that hinders your growth.

Watch Out For Hidden Costs

Beyond the sticker price, hidden costs can significantly impact your budget. Implementation fees, data migration expenses, and training costs can add up. Some providers also charge extra for premium support or specific integrations.

Before committing to a software solution, thoroughly review the pricing details and ask about any potential hidden fees. Multi-currency support, essential for international businesses, can sometimes come at an additional cost. Understanding the full cost picture upfront helps you make an informed decision and avoid unexpected expenses.

Select the Right Software

Choosing the right accounting software for your SaaS business can feel overwhelming. But by breaking down the selection process into digestible steps, you can confidently find the perfect fit.

Assess Your Business Requirements

Before you even start browsing software options, take some time to map out your specific needs. Think about your current financial processes.

What’s working? What’s clunky? If you’re handling multiple entities, how do you manage consolidation and reporting across them? Do you operate internationally and need multi-currency support?

Understanding your pain points and priorities will guide you toward a solution that addresses them directly. Consider factors like the number of users who will need access, the complexity of your revenue recognition model, and any necessary integrations with existing systems, such as your CRM. Documenting these requirements upfront will save you time and headaches down the line.

Evaluate Software Compatibility

Once you have a clear picture of your needs, you can start evaluating different software options. Can the software handle multiple business accounts in one central location, and does it offer flexible user access with varying permission levels? For SaaS businesses, seamless integration with other tools is crucial.

Your accounting software should connect effortlessly with your billing platform, payment gateways, and other key systems to streamline data flow and reduce manual entry. This interoperability ensures that all your financial data is accurate and readily available. If you’re working with international clients, confirm that the software supports multiple currencies and languages. This feature simplifies transactions and reporting across different regions.

Consider Future Growth

While your current needs are important, don’t forget to consider your future growth trajectory. The software you choose should be scalable enough to accommodate your expanding operations. As your business grows, you’ll likely need more advanced features, increased user capacity, and potentially even new integrations. Choosing software that can adapt to these changes will prevent you from having to switch systems down the line, saving you time and resources.

The best software choice depends on your company's size, budget, and specific needs, so keep these factors top of mind as you evaluate your options. Look for software that offers a clear upgrade path and has a proven track record of supporting growing businesses. A solution that can scale with you will be a valuable asset as you build and expand your SaaS empire.

Implement and Maximize Efficiency

Once you’ve chosen your bookkeeping software, focus on implementation and maximizing its potential. A smooth transition and proper training are key to leveraging all the features and benefits. Here’s how to make the most of your new system:

Migrate Your Data

Transferring existing financial data is a critical first step. Work with your software provider or an implementation specialist to ensure a clean and accurate data migration. Backing up your data before starting the migration is also essential.

Many platforms offer import tools or APIs to streamline this process, eliminating duplicate data entry and reliance on manual spreadsheets. This approach saves you time and reduces the risk of errors.

Train Your Team

Getting your team on board is essential for successful software adoption. Provide comprehensive training on the new system, focusing on the features relevant to each team member's role. Hands-on training and clear documentation will help your team quickly become proficient with the software.

The right software should empower your team to track profit and loss, financial position, and cash flow for all business units, ultimately leading to greater efficiency and fewer mistakes.

Automate Recurring Tasks

One of the biggest advantages of bookkeeping software is automation. Identify repetitive tasks, such as invoice generation, payment reminders, and reporting, and set up automated workflows. Tabs automates all these processes to not only save time but also reduces errors.

This efficiency boost frees up your team to focus on higher-value activities, like financial analysis and strategic planning.

Leverage Advanced Reporting

Take advantage of the advanced reporting capabilities offered by your software. Generate consolidated financial statements, custom reports, and real-time dashboards to gain deeper insights into your business performance. Robust reporting features help you identify trends, track key metrics, and make informed decisions. This data-driven approach is crucial for optimizing financial management and driving growth.

Security and Data Protection

When dealing with financial data from multiple businesses, security is paramount. A breach can be devastating, both financially and reputationally. This section covers key security considerations when choosing bookkeeping software.

Implement Robust Security

Look for software with robust security measures like encryption, two-factor authentication, and regular security audits. Encryption ensures your data is unreadable to unauthorized parties, while two-factor authentication adds an extra layer of login protection. Regular security audits by the software provider demonstrate their commitment to identifying and addressing vulnerabilities.

Features like SOC 2 compliance reports offer third-party validation of the software's security practices. Don't hesitate to ask potential vendors about their specific security protocols and certifications. This due diligence is essential for safeguarding your business.

Manage User Access

Your bookkeeping software should offer granular control over user access. This means different team members can have different permission levels. For example, some employees might only need to view reports, while others require access to edit financial records. This role-based access control minimizes the risk of unauthorized changes or accidental errors.

Look for software that allows you to customize access levels based on individual roles and responsibilities. This not only enhances security but also streamlines workflows by ensuring each team member has access to the tools and data they need—and only what they need. Clear user access management is a cornerstone of effective and secure bookkeeping.

User Feedback and Common Concerns

When it comes to managing multiple entities, user feedback on bookkeeping software is a mixed bag. Many appreciate how accounting software can scale with their business needs. However, some users report difficulties with customer support and the learning curve for advanced features. This is a key consideration for businesses that need robust software and readily available support during implementation.

For example, some popular accounting software gets consistently high marks for its robust features and user-friendliness. However, pricing is a recurring concern, especially when managing multiple entities. Users often find that costs can balloon as they add more entities. Before choosing a platform, it's wise to project how your pricing will evolve as your business grows.

Then there are platforms known for user-friendly design and great customer support, features many users value. The trade-off, some note, can be limitations in advanced accounting features. This could be a drawback for businesses needing more comprehensive tools for multiple entities.

Ultimately, while these software solutions offer many advantages, it's essential to consider the concerns raised by current users. Pay close attention to feedback on pricing, support, and feature limitations. Research and comparison will help you find the best fit for your business.

Make the Final Decision

Choosing the right bookkeeping software for multiple businesses is a big decision. It's an investment of both time and money, so you want to make the right choice.

First, revisit your list of business requirements. Have your needs shifted since you began your research? Perhaps you anticipate significant growth or plan to expand internationally. Scalability and flexibility are key; your chosen software should grow with your business.

Next, double-check software compatibility with your existing systems. Smooth data transfer and integration will save you time and effort. If you rely heavily on certain tools, ensure your new bookkeeping software connects with them seamlessly.

Now, think about reporting. Can the software generate consolidated financial reports across all your entities, giving you a clear overview of your overall financial health? Look for software with robust and customizable reporting features, allowing you to analyze data at different levels of detail.

Finally, take some time to review user feedback and case studies. Look for reviews from similar businesses to understand how the software performs in practice. Do users find it intuitive and easy to use? Does it truly streamline their multi-entity bookkeeping processes?

By carefully considering these factors, you can confidently choose the best bookkeeping software to support your business’s long-term success. This careful selection process sets the stage for efficient financial management and informed decision-making.

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Frequently Asked Questions

Why do I need specialized software for multiple businesses, can't I just use separate spreadsheets?

While spreadsheets can work for very simple setups, they quickly become unwieldy and error-prone as your business grows and you add more entities. Specialized software offers features like automated reporting, consolidated financials, and streamlined workflows that spreadsheets just can't match. This saves you time and reduces the risk of costly mistakes.

What are the key features to look for in multi-entity bookkeeping software?

Essential features include the ability to manage multiple companies within a single platform, consolidate financial reports, customize charts of accounts, support multiple currencies, and control user access. Seamless integration with other business systems, like your billing platform and CRM, is also crucial for efficient data flow. Look for software that offers robust reporting capabilities and automation features to streamline your workflows.

How much does multi-entity bookkeeping software typically cost?

Pricing varies widely depending on the software provider and the features you need. Many providers use tiered pricing structures, with basic plans starting as low as $15 per month per business. As you add more entities and require more advanced features, the cost will increase. Be sure to factor in potential hidden costs like implementation fees and training expenses.

What are some common concerns users have about this type of software?

User feedback often highlights concerns about customer support responsiveness, the learning curve for complex features, and the potential for escalating costs as you add more entities. Some users also find certain interfaces less intuitive than others, which can complicate managing multiple accounts. Reading reviews and comparing different options can help you find software that addresses these potential pain points.

How can I ensure a smooth transition when implementing new bookkeeping software?

Focus on a clean data migration from your existing systems, provide thorough training for your team, and leverage the software's automation capabilities to streamline recurring tasks. Take advantage of advanced reporting features to gain valuable insights into your business performance. And don't forget about security: implement robust security measures and manage user access carefully to protect your financial data.